species:   Rhsol
pid:       PID0522
parent:    Rhi-milR-4
paralog:   
locus:     KB319457.1:244-354
matures:   ['AACAGAUUGCCACAAGGGAGAGG', 'ACCCUUUGUGGCCAAUUUGCAAG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB319457.1:244-354

22 out of bounds
3 alignments
2 proper strand
0 stranded perfect matches

                   *************************                       *************************                   
GGAACUCAACUGGAAUGAUGCCACCCUUUGUGGCCAAUUUGCAAGUGGACUUCACUGGGAGGUCUGGAAACAGAUUGCCACAAGGGAGAGGCAACCCCAAACCUUGAGGGA
....(((((.(((...(.((((.(((((((((((.((((((....((((((((.....))))))))....)))))))))))))))).).)))).).)))....)))))...
--------------------------------------------------------------------AACAGAUUGCCACAAGGGAGAGG-------------------- l=23 a=0 c
----------------------ACCCUUUGUGGCCAAUUUGCAAG------------------------------------------------------------------ l=23 a=0 c*
--------------------------------------------------------------------AACAGAUUGCCACAAGGGAGAGG-------------------- l=23 a=0 ma
----------------------ACCCUUUGUGGCCAAUUUGCAAG------------------------------------------------------------------ l=23 a=0 ma*


No alignments to locus

mb-01011
ax-1011011
ku-01
ss-110110111100
fn-001
